Abelleira Martínez, OJ*, AK Fremier, Z Ramos-Bendaña, SM Galbraith, S Günter, L Vierling, NA Bosque-Pérez, and JC Ordoñez. In press. Scaling-up spatial variation in functional traits to inform ecosystem service management: assumptions and methods. Ecology and Evolution.

Estrada-Carmona, N*, AK Fremier, FAJ DeClerck and EB Harper. In press. Quantifying model uncertainty to improve watershed-scale ecosystem service quantification: a global sensitivity analysis of the RUSLE. International Journal of Biodiversity Science, Ecosystem Services & Management.

Goldberg C.S., et al. In press. Critical considerations for the application of environmental DNA methods to detect aquatic species. Methods in Ecology and Evolution. 

Meija, F.H.* C.V. Baxter, E.K. Berntsen, and A.K Fremier. In press. [Special Issue on Resource Subsidies] Linking groundwater-surface water exchange to food production and salmonid growth. Canadian Journal of Fisheries and Aquatic Sciences. 1-11 

Benson, M.H., Lippitt, C.D., Morrison, R., Cosens, B., Boll, J., Chaffin, B.C., Fremier, A.K., Heinse, R., Kauneckis, D., Link, T.E., Scruggs, C.E., Stone, M., Valentin, V., 2015. Five ways to support interdisciplinary work before tenure. Journal of Environmental Studies and Science.
Buxton, TH, Buffington, JM, Yager, EM, Hassan, MA, Fremier, AK, 2015. The relative stability of salmon redds and unspawned streambeds. Water Resources Research 51, 6074–6092.
Buxton, TH, Buffington, JM, Tonina, D, Fremier, AK, Yager, EM, Post, J, 2015. Modeling the influence of salmon spawning on hyporheic exchange of marine-derived nutrients in gravel stream beds. Canadian Journal of Fisheries and Aquatic Sciences 72, 1146–1158.
Fremier, AK, M Kiparsky, S Gmur, J Aycrigg, L Svancara, R Kundis Craig, B    Cosens, D Goble, F Davis and JM Scott. 2015. A riparian conservation        network for ecological resilience. Biological Conservation 191: 29-37
Strickler, KM*, Fremier, AK, Goldberg, CS 2015. Quantifying effects of UV,          temperature, and pH on degradation rates of eDNA in an aquatic microcosm.      Biological Conservation 183: 85-92

Cosens, B. and AK Fremier. Assessing system resilience and ecosystem                services in large river basins: a case study of the Columbia River Basin.              2014 Natural Resources Environmental Law. 51 Idaho Law Review 91.
Bellmore, J.R., AK Fremier, FH Mejia*, and M Newsom. 2014. A mechanism-        based trophic productivity model to simulate periphyton growth. Freshwater      Biology 59(7): 1437-1451
Fremier, AK, Girvetz, EH, Greco, SE, Larsen, EW 2014. Quantifying                process-based mitigation strategies in historical context: separating multiple      cumulative effects on river meander migration. PLoS One. 9(6), e99736.            doi:10.1371/journal.pone.0099736
Niemeyer, RN*, AK Fremier, R. Heinse, W. Chávez Huamán, and FA DeClerck.        2014. Woody vegetation increases saturated hydraulic conductivity in dry          tropical Nicaragua. Vadose Zone 13(1).

Hegg, JC, BP Kennedy, and AK Fremier. 2013. Predicting strontium isotope              variation and fish location with bedrock geology: Understanding the effects        of geologic heterogeneity. Chemical Geology. 360: 89-98

Fremier, AK, FA DeClerck, N. Bosque-Perez, N. Estrada Carmona, R. Hill, T. Joyal, L Keesecker, PZ Klos, A Martinez-Salinas, R Niemeyer, A Sanfiorenzo, K Welsh, and J. D. Wulfhorst. 2013. Understanding spatiotemporal lags in       ecosystem services to improve incentives. BioScience. 63(6):472-482
Smith, M.E., T. Henkel, J. Uehling, A.K. Fremier, Clarke, and R. Vilgalys. 2013.        The ectomycorrhizal fungal community in a tropical forest dominated by the        neotropical dipterocarp Pakaraimaea dipterocarpacea. PloS One.

Viers, J. H., A. K. Fremier, R. A. Hutchinson, J. F. Quinn, J. H. Thorne, and M. G.       Vaghti. 2012. Multiscale Patterns of riparian plant diversity and                         implications for restoration. Restoration Ecology.

Fremier, A.K. and K.M. Strickler. 2011. Topics in River Structure and Function.        BioScience. Introduction to paper compilation.               

Harper, E.B., J.C. Stella, and A.K. Fremier. 2011. Using ecologically meaningful sensitivity analyses to quantify complex model uncertainty: A case study of Fremont cottonwood (Populus fremontii) population dynamics. Ecological Applications. 21(4):1225-1240

Smith, M. E., T. W. Henkel, M. Catherine Aime, A. K. Fremier, and R. Vilgalys. 2011. Ectomycorrhizal fungal diversity and community structure on three co-occurring leguminous canopy tree species in a Neotropical rainforest. New Phytologist 192:699-712.

Stella, J., M. Hayden, J. Battles, H. Piégay, S. Dufour, and A. Fremier. 2011. The role of abandoned channels as refugia for sustaining pioneer riparian forest ecosystems. Ecosystems 14:776-790.

Fremier, A.K., J.I. Seo, and F. Nakamura. 2010. Downstream connectivity and fluvial export of large wood: dynamic patterns and processes in the river corridor. Geomorphology 117:33-43.

Savage, W.K., A.K. Fremier, and H.B. Shaffer. 2010. Within-population processes override the signal of a landscape influence on genetic structure of the southern long-toed salamander. Molecular Ecology. 19: 3301-3314.

Viers, JH, AK Fremier, and RA Hutchinson. 2010. Predicting map error by modeling the Sacramento River floodplain. Proceedings from the 2010 ESRI International User Conference, San Diego, California. 21 ppd.

Fremier, A. K., and T. S. Talley. 2009. Scaling riparian conservation efforts with river hydrology: lessons from blue elderberry distributions along four central California rivers. Wetlands 29:150-162.

Smith, M. E., G. W. Douhan, A. K. Fremier, and D. M. Rizzo. 2009. Are true multihost fungi the exception or the rule? Dominant ectomycorrhizal fungi Pinus sabiniana differ from those on co-occurring Quercus species. New Phytologist. 128:295-299.

Vaghti, M.G., M. Holyoak, A. Williams, T.S. Talley, A.K. Fremier, and S.E. Greco. 2009. Understanding the ecology of blue elderberry to inform landscape restoration in semi-arid river corridors. Environmental Management 43: 28-43.

Dixon, M.D., J.C. Stromberg, J.T. Price, H. Galbraith, A.K. Fremier, and E.W. Larsen. 2007. Potential Effects of Climate Change on the Upper San Pedro Riparian Ecosystem: Boon or Bane? (Chapter 3). in J. Stromberg and B. Tellman, editors. Riparian Area Conservation in a Semi-Arid Region: The San Pedro River Example.

Greco, S.E., A.K. Fremier, R.E. Plant, and E.W. Larsen. 2007. A method to track surficial patterns of floodplain chronology on a large meandering river: Analysis of land production rates and riparian vegetation distribution over land age gradients. Landscape and Urban Planning 81:354-373.

Larsen, E.W., E.H. Girvetz, and A.K. Fremier. 2007. Landscape level planning in alluvial riparian floodplain ecosystems: using geomorphic modeling to avoid conflicts between human infrastructure and habitat conservation. Landscape and Urban Planning 79:338-346.

Larsen, E. W., A. K. Fremier, and E. H. Girvetz. 2006. Modeling the effects of variable annual flow on river channel meander migration patterns, Sacramento River, California, USA. Journal of the American Water Resources Association 42:1063-1075.

Larsen, E. W., A. K. Fremier, and S. E. Greco. 2006. Cumulative effective stream power and bank erosion on the Sacramento River, California, USA. Journal of the American Water Resources Association 42:1077-1097.

Larsen, E.W., E.H. Girvetz, and A.K. Fremier. 2006. Assessing the effects of alternative setback channel constraint scenarios employing a river meander migration model. Environmental Management 37:880-897.

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